SE3520301

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6519
  • Mimulus guttatus
  • SE3520301
  • Mutator
  • M15
  • scaffold_7:14116395-14116773
  • TATAAATAA
  • AGGGTAATTAGCACTTAACC

Secondary structure and sequence

TSD    TIR
5'



3'
TATAAATA       T     C      CCCT  A            T   G      -    C      A              T       -A          CC A     C        G     CC  C          CT        CACG    AGTATTTTT     --      - -CCCTT   CT
        AGGGTAA TAGCA TTAACC    GT GTTACAAGCTTT GCA ATGACC CCTT GTACTT TAATATCAGCACAT ACCCCTT  TGGTTTATGG  G GGTAG TTCCGTTA TTTTT  GT AAACTTAATC  GTGTGTCA    TCAA         TTTGC  AGATGA C      GTG  
        ||||||| ||||| ||||||    || |||||||||||| ||| |||||| |||| |||||| |||||||||||||| |||||||  ||||||||||  | ||||| |||||||| |||||  || ||||||||||  ||||||||    ||||         |||||  |||||| |      |||   
        TCCCATT ATCGT AATTGG    CA CAATGTTCGAAA CGT TACTGG GGAA CATGAG ATTATAGTCGTGTA TGGGGGA  ACCAAATACC  C CCATC AAGGCAAT AAAAA  CA TTTGAATTGG  CACACAGT    AGTT         AGACG  TTTACT G      TAC  
AATAAATA       T     A      --CT  C            C   G      A    -      C              T       AC          -- -     A        -     AA  A          CT        TTAA    --CCCCCGT     AT      T CCCTTT   TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End