Plant MITE

SE3520303

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6521
Mimulus guttatus
SE3520303
Mutator
M11
scaffold_12:20457877-20458063
TTAAGTTTG
AAGTTTGCGGAGATTAGATGCTACACCTGATTATTTTCACTTGGTGACTTTGAACCGTAGATCTACACATAATCACACACAC

Secondary structure and sequence

TSD TIR

5'

3'

 TT  G  T    A   T              A      T    --T  T  C              ------------    -ACA   T     --    CC
   AA TT GCGG GAT AGATGCTACACCTG TTATTT CACT   GG GA TTTGAACCGTAGAT            CTAC    TAA CACAC  ACAC  
   || || |||| ||| |||||||||||||| |||||| ||||   || || ||||||||||||||            ||||    ||| |||||  ||||   
   TT AA TGCC CTA TCTACGATGTGGAC AATAAA GTGG   CC CT AAACTTGGCATCTA            GATG    ATT GTGTG  TGTG  
TTC  G  T    C   -              C      T    CCT  -  -              AACTAATTTATT    GGAG   C     TA    TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520303

TTAAGTTTGCGGAGATTAGATGCTACACCTGATTATTTTCACTTGGTGACTTTGAACCGTAGATCTACACATAATCACACACACCCATGTGTATGTGTGCTTAGAGGGTAGTTATTTAATCAAATCTACGGTTCAAATCCCTCCGGTGTAAATAACCAGGTGTAGCATCTATCCCCGTTAAGTTCTT

Copy Cancel