SE3520305

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6523
  • Mimulus guttatus
  • SE3520305
  • Mutator
  • M2
  • scaffold_11:3137856-3138402
  • TATCAAAAG
  • AAATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATCAAAAG     TGCCAAGT   C      A  CAC -     TGCTAACGAAGTAAATCTTGATTTATAGGGTAAATTACAGCCACACTGAGGTAATGTCAAATTACGAAAAAATCCCTCATATTTGGGTAATTACAACCACCCCTTTAACTATGAATCTTCGTACACGTCCACCCTTATGGTGTCAAATTCAACATAATCTTTAAATTCCGTGGAATGTTCTCTAGTTTGTACTCGTTTTGTGCAAAAATGCAGTTTCTGATGCACCAC
         AAATC        TGA TCAAGA TT   T GCTTC                                                                                                                                                                                                                                    
         |||||        ||| |||||| ||   | |||||                                                                                                                                                                                                                                    A
         TTTAG        TCC CATTTA AT   G CGGTG                                                                                                                                                                                                                                    
      ATA     -------T   -      -  --- C     GGGACTCCATTCCAGCTTAATGCTTTTTAGGGAGTACAAACCCATTAATGTTGGTGGTGGGAGTTGATACTTAGAAGAATGTGTAGGTGGGAACGCCACAGTTTAAATCACCTTAGAAGATCTAATACACCTTATAAGAGGTCAAACATGGGCAAAATGGGGTAAGCTCGAGGTGTAAAACTTTGTTCTACTAGTATTCTACAGAGATAGCCGAACATTTATAGTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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