SE3520307

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6525
  • Mimulus guttatus
  • SE3520307
  • Mutator
  • M40
  • scaffold_7:1028197-1028428
  • TAAAAATAT
  • GGGTTTATTGCAATTAAGACCCCTATGTTATATTGAATTGCTAAAAAACTACTTCATGTTATTTTATCGGCAAAAAACTCCCTATGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAATATC         G      AG      A                      A         G            C     A    C       CAAACTTTTTTTTACCA
          GGGTTTATT CAATTA  ACCCCT TGTTATATTGAATTGCTAAAAA CTACTTCAT TTATTTTATCGG AAAAA CTCC TATGATT                 
          ||||||||| ||||||  |||||| |||||||||||||||||||||| ||||||||| |||||||||||| ||||| |||| |||||||                  
          CTCGAATAA GTTAAT  TGGGGG ACAGTATAGCTTAACGATTTTT GATGGGGTA AATAAAATAGCC TTTTT GGGG ATACTAA                 
CTATAAAAAT         G      GA      C                      C         A            A     A    C       ACTAAATCCCCCAACAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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