SE3550308

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6526
  • Mimulus guttatus
  • SE3550308
  • PIF/harbinger
  • To2
  • scaffold_6:14773645-14773906
  • TTA
  • AGGCCCCGTTTGGTTGACAAGATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                A       AGATT     A   AA         ATC    GAGACCCAATTATTTTATTGGAGCTTGAAAGGTCCAACAAAAAAAACTCATTAAAAGGCAAGATAAGCCAAGATAA
  AGGCCCCGTTTGGTTG CAAGATA     AGCCA GAT  GACTAAATA   TAAT                                                                            
  |||||||||||||||| |||||||     ||||| |||  |||||||||   ||||                                                                             
  TCCGGGGCAAACCAAC GTTCTAT     TCGGT CTA  TTGATTTAT   CCTG                                                                            
AT                G       -----     A   -A         CAA    AATTAAACTACAAACCATAGGAGTTATTGAACGGCCCAGCTGGGCGGTTTTAATATATTAGTACCGAATATAACAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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