Plant MITE

SE3510309

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6527
Mimulus guttatus
SE3510309
Tc1/Mariner
St4
scaffold_8:15479839-15480114
TA
TACTCCCTCTGTTCCACAATAACTGTCTTTTTTTA

Secondary structure and sequence

TSD TIR

5'

3'

               AC     C    T       ---AA    TTTTTGTTCCATATTATCTGTCACTTTAGATTTCCAATACTGCATTAAATGCATTTGTACTGTTTTAACCTTATTAATGCATCTCTAAACATTAA
TACTCCCTCTGTTCC  AATAA TGTC TTTTTTA     AATA                                                                                               
|||||||||||||||  ||||| |||| |||||||     ||||                                                                                               T
ATGAGGGAGGCAAGG  TTATT ACAG AAAAAGT     GTGT                                                                                               
               AT     C    C       GAAAA    TTCTAATTCTTTAAGTTAATTACATCGAACTAAAATTTTTTTAGTGTATTTTTACTGATTTTGTTGGAAATAGTAAATTAATAAATATTCTCTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510309

TACTCCCTCTGTTCCACAATAACTGTCTTTTTTTAAAAATATTTTTGTTCCATATTATCTGTCACTTTAGATTTCCAATACTGCATTAAATGCATTTGTACTGTTTTAACCTTATTAATGCATCTCTAAACATTAATTCTCTCTTATAAATAATTAAATGATAAAGGTTGTTTTAGTCATTTTTATGTGATTTTTTTAAAATCAAGCTACATTAATTGAATTTCTTAATCTTTGTGAAAAGTGAAAAACGACACTTATTTAGGAACGGAGGGAGTA

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