Plant MITE

SE3520311

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6529
Mimulus guttatus
SE3520311
Mutator
M9
scaffold_6:18085421-18085722
TGAATTTAG
TGAATTTAGCGAAAAATACAGTTTTCATCCCTCAAGTTTCCACCAATT

Secondary structure and sequence

TSD TIR

5'

3'

         -C    AA                   G   C  C     ---------   - TTTGGTACCTTATGTTTCCAAAAATCAACACTTTTACTCATTTTCTTCAATTTTTCATTAAAACTAACGGAATCAAGCGTGTGTCTGGCACTAC
TGAATTTAG  GAAA  TACAGTTTTCATCCCTCAA TTT CA CAATT         CAC A                                                                                              
|||||||||  ||||  ||||||||||||||||||| ||| || |||||         ||| |                                                                                               
ATTTAAGTC  CTTT  ATGTCAAAAGTAGGGAGTT AAA GT GTTAA         CAG G                                                                                              
         CC    -G                   A   C  A     AGTATAAAT   G AGTATAAGTGTTGTTTGTGTAAATCAGTGAGTACAAGGTTATTAAATTGTGAAAACCAGTAAAGGCAGTTAAATGGCAATCAGGCATTCAATTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520311

TGAATTTAGCGAAAAATACAGTTTTCATCCCTCAAGTTTCCACCAATTCACATTTGGTACCTTATGTTTCCAAAAATCAACACTTTTACTCATTTTCTTCAATTTTTCATTAAAACTAACGGAATCAAGCGTGTGTCTGGCACTACCTTAACTTACGGACTAACGGTAAATTGACGGAAATGACCAAAAGTGTTAAATTATTGGAACATGAGTGACTAAATGTGTTTGTTGTGAATATGAGGGACTAAATATGAAATTGATGCAAAATTGAGGGATGAAAACTGTAGTTTCCCCTGAATTTA

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