SE3550313

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6531
  • Mimulus guttatus
  • SE3550313
  • PIF/harbinger
  • To7
  • scaffold_11:5223126-5223494
  • TAA
  • AGAGCAACTCCAATGCTAGATATTAAAATTGAGTTATCAAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               CTA   -      ATT    TA       ---   ATTTGATATTTGAAAATTATTTTAATATTGATTTAAAATTCATTTACTCCAACCATAGTTATCAAATTAATTATCAATTGGAAGTTTATGGGTGGTTTTATCCGTAATTGCCACGTGTCAACTTTTGATTGGGTGT
  AGAGCAACTCCAATG   GAT ATTAAA   GAGT  TCAAATA   GTC                                                                                                                                        
  |||||||||||||||   ||| ||||||   ||||  |||||||   |||                                                                                                                                         
  TCTCGTTGAGGTTAC   CTA TAGTTT   CTCA  AGTTTGT   TTG                                                                                                                                        
AA               --C   A      -AT    TA       AAA   AGGGTAAATGTTTGAATTTTAACCTTTAGAAATTGAGGTTACCCCAATAGTTTACTCCAAAGTTAAAACTATTAAGTGGAAAACCCAACATTTTTATGAACGACCTTTAACTCAATAGTTTTTACATTGGAGGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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