SE3520314

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6532
  • Mimulus guttatus
  • SE3520314
  • Mutator
  • M8
  • scaffold_10:5965311-5965776
  • TTATACATA
  • AGGGTAAATTACAACCACCTCCTGAGGTATGGTCATTTTACGAAAAACCCCTCTTGTTTGGATAATTACATCTACCCCTTAATTATGATTTTTTCTTACACCTC

Secondary structure and sequence

TSD    TIR
5'



3'
TTATACAT                     CTG           TT        AA              A        TC                TT        C  C  CACC   A            CAACAT    A  T     TC         GC  TAG                   AAA ---- A  -- T  C --- ATGCACCACAATCTGATATATACAAGCCA
        AGGGTAAATTACAACCACCTC   AGGTATGGTCA  TTACGAAA  CCCCTCTTGTTTGG TAATTACA  TACCCCTTAATTATGA  TTTTCTTA AC TC    CTT TGGTTTCAAATT      AATC TC AGATT  GTGGAATGT  TC   TTTGTACTCGTTTTGTGTA   A    T CA  G TT T   G                             
        |||||||||||||||||||||   |||||||||||  ||||||||  |||||||||||||| ||||||||  ||||||||||||||||  |||||||| || ||    ||| ||||||||||||      |||| || |||||  |||||||||  ||   |||||||||||||||||||   |    | ||  | || |   |                             A
        TCCCATTTAATGTTGGTGGGG   TCCATACCAGT  AATGTTTT  GGGGAGAACAAACC ATTAATGT  GTGGGGAGTTGATATT  AGAAGAAT TG AG    GAA GCCAAAGTTTAA      TTAG AG TCTAA  TACCTTATA  AG   AAACATGGGCAAAATTTGG   T    T TG  G TA T   A                             
ATACATAT                     CAA           TT        -G              C        TA                -T        A  C  TTAA   C            ATCACC    A  C     TA         AT  TGA                   --- AAGC -  AG -  - AAA CTTCGTTCTACTAGTATGATACACAAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End