Plant MITE

SE3530315

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6533
Mimulus guttatus
SE3530315
hAT
Hat21
scaffold_5:22761829-22762401
GTTGAACT
GTTGAACTCAGTGCCGGCCCTGA

Secondary structure and sequence

TSD TIR

5'

3'

    G   T   T     C     -----   CA    GCACAAGCAATGGCTTGGGGCCCCACTTCTTTAGCGGCCCCCAAATTAAAAAAAAAAAAAGTATATATACATATATAAATAGTCTTGTGTTTTTAGTAGTTTAAAATGAGCTTTTTATAAATCACAATATTTAATTGGGATTTAGGGTATATTTTCAATCCGGCTCAAATTAATTGCACATTTTCTGTTAAGCATTGGGAATGAAAAACAAAAAATCCTACTGCATCAAATTTAATATTTTACTGTCCATCAT
 GTT AAC CAG GCCGG CCTGA     GCC  TGCT                                                                                                                                                                                                                                                             
 ||| ||| ||| ||||| |||||     |||  ||||                                                                                                                                                                                                                                                              
 CAA TTG GTC CGGCC GGACT     AGC  CCCG                                                                                                                                                                                                                                                             
T   G   -   C     A     GTAAA   --    GGATTCGCATAAAATTTTTTTACTAATAAAATACTAATTATGAATAAATTGAACTATTTTGTTTGTTTTTATTTATATAATACTGTAATCACTTACTCCTATTTTTACGTATTTGGATGTGATTTATAATAACTTTAAATAAATATAAATAAATAAATCATAATAATAATAATAATAATAAAAAATATTTCAAAAAACTCAACGTTGCATTCAATACTGTTTTTTCTACTTAATAAAGAGAAAAAAAAGAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530315

GTTGAACTCAGTGCCGGCCCTGAGCCCATGCTGCACAAGCAATGGCTTGGGGCCCCACTTCTTTAGCGGCCCCCAAATTAAAAAAAAAAAAAGTATATATACATATATAAATAGTCTTGTGTTTTTAGTAGTTTAAAATGAGCTTTTTATAAATCACAATATTTAATTGGGATTTAGGGTATATTTTCAATCCGGCTCAAATTAATTGCACATTTTCTGTTAAGCATTGGGAATGAAAAACAAAAAATCCTACTGCATCAAATTTAATATTTTACTGTCCATCATTAAAGAAAAAAAAGAGAAATAATTCATCTTTTTTGTCATAACTTACGTTGCAACTCAAAAAACTTTATAAAAAATAATAATAATAATAATAATACTAAATAAATAAATATAAATAAATTTCAATAATATTTAGTGTAGGTTTATGCATTTTTATCCTCATTCACTAATGTCATAATATATTTATTTTTGTTTGTTTTATCAAGTTAAATAAGTATTAATCATAAAATAATCATTTTTTTAAAATACGCTTAGGGCCCCGAAAATGTCAGGACCGGCCCTGGTTGAACT

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