SE3520317

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6535
  • Mimulus guttatus
  • SE3520317
  • Mutator
  • M8
  • scaffold_12:872917-873385
  • TTATATATA
  • TATATATAGGGTAAATTACAACCATCCCCGAGGTATGGTCAAATTACGAAAACCCCCCTCCTGTTTGGGTAATTACAACCACCCATCAACTAT

Secondary structure and sequence

TSD    TIR
5'



3'
T        -                -T    -             A         CC     CC                ACC    A        --AAATC         G C        CA  T          TGG    T  G     ATA      ATTATCACT       C  -TT     ---CTA  -----    TTCCACATTTTGAAGCAAGATGATCATAATATGT
 TATATATA GGGTAAATTACAACCA  CCCC GAGGTATGGTCAA TTACGAAAA  CCCCT  TGTTTGGGTAATTACA   ACCC TCAACTAT       TTCTTACAC T CACCCTTG  GT TCAGATTTAG   AATC TC AGATT   TGGAAT         TTTGTAC CG   TTATC      TT     CGAA                                  
 |||||||| ||||||||||||||||  |||| ||||||||||||| |||||||||  |||||  ||||||||||||||||   |||| ||||||||       ||||||||| | ||||||||  || ||||||||||   |||| || |||||   ||||||         ||||||| ||   |||||      ||     ||||                                   
 ATATATAT CCCATTTAATGTTGGT  GGGG CTCCATACCAGTT AATGCTTTT  GGGGA  ACAAACCTATTAATGT   TGGG AGTTGATA       AGGAATGTG A GTGGGAAT  CA AGTTTAAGTT   TTAG AG TCTAA   ACCTTA         AAACATG GC   ACACA      TG     GACT                                  
         T                TT    A             A         TT     AA                AAA    G        CTAAAAA         G A        AC  C          GTA    T  A     AAC      CACGAAATC       A  TAA     TTTTTA  TCAAA    ATGTGGTGTTACACTATATATGTTCAGTTTTTTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End