SE3520318

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6536
  • Mimulus guttatus
  • SE3520318
  • Mutator
  • M2
  • scaffold_7:5028116-5028585
  • TTATTTCAT
  • GGGTAAATTACGGTCACCCCTGAGGTAAGGTCAAATTACAAAAAAGTCTCTCCTATTTGGGTAATTACAACCACCCCCTCAACTACGAATTTTCTTACACATTCACCCTAGTGGTGTTAAATTTAGTGGAATCTTCTAGATTATGTGAAATATTCTCCAATTTATACCCGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTTCATT                  --                     -       T     CTA           A          C       C              A        A                TGG             A        A     CAA   A   C     ACTTCCA    AGCTCCACATTTAGAACAAGATGATCATAAGATGTGTCTCTT
          GGGTAAATTACGGTCACC  CCTGAGGTAAGGTCAAATTAC AAAAAAG CTCTC   TTTGGGTAATT CAACCACCCC TCAACTA GAATTTTCTTACAC TTCACCCT GTGGTGTTAAATTTAG   AATCTTCTAGATT TGTGAAAT TTCTC   TTT TAC CGTTT       TTCG                                          
          ||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||   ||||||||||| |||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||   ||||||||||||| |||||||| |||||   ||| ||| |||||       ||||                                          G
          CCCATTTAATGCCGGTGG  GGACTCCATTCCAGTTTAATG TTTTTTT GGGAG   AAACCTATTAA GTTGGTGGGG AGTTGAT CTTAGAAGAATGTG AGGTGGGA TATCACAGTTTAAGTT   TTAGAAGATCTAA GCACTTTA AAGAG   AAA ATG GCAAA       ACGT                                          
TTACTTTATT                  AG                     C       T     TAC           A          -       A              C        A                GTA             G        C     ATC   C   A     -----AC    TTTTACGTCAAAGACTACGTGGTGTTAGACTATAAATGTTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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