SE3520319

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6537
  • Mimulus guttatus
  • SE3520319
  • Mutator
  • M8
  • scaffold_12:16633313-16633671
  • TTTTCTTTT
  • GGGCAAATTACGGCCACCCCCCTGAGCTATGGTCAAATTACGAAAACCCCGCTCCTGTTTGGGTAATTACAGCTACCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTCTTTT                         GC                   CC  G   C                G       CT     ATGT TTTATCTTACGAAAAGATCCCTCCAGAGGTAAATTTAGGGTTGTTAATTCGGTAAAACCGGACCAAAATTTCGGTACGCCA
         GGGCAAATTACGGCCACCCCCCTGA  TATGGTCAAATTACGAAAA  CC CTC TGTTTGGGTAATTACA CTACCCC  CAACT    A                                                                                 
         |||||||||||||||||||||||||  |||||||||||||||||||  || ||| |||||||||||||||| |||||||  |||||    |                                                                                 A
         CCCGTTTAATGCCGGTGGGGGGACT  ATACCAGTTTAATGCTTTT  GG GAG ACAAATCCATTAATGT GGTGGGG  TAAAA    T                                                                                 
TTTTCTTTT                         AC                   TT  G   A                A       AG     ---- TAATAAAAATGCATTTTAAATACATTAAGCCAATAAATGGCTTGGTTTAGCATATAAAACAAGCCATTTGCCATACTTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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