SE3550320

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6538
  • Mimulus guttatus
  • SE3550320
  • PIF/harbinger
  • To2
  • scaffold_7:12845923-12846164
  • TAA
  • AGGCCCCGTTTGGTTGCCAAGTTAAGCCATGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                C    T  -----     T   -TAAC         -----          TGATGT    TATCCCCAATAAATTGCCGGGTCGACCCGCCAAAATTATGTAATCATGGC
  AGGCCCCGTTTGGTTG CAAG TA     AGCCA GAT     TAAATAGTT     GGACTTAATT      TTGG                                                  
  |||||||||||||||| |||| ||     ||||| |||     |||||||||     ||||||||||      ||||                                                   
  TCCGGGGCAAACCAAC GTTC AT     TCGGT CTA     ATTTATCAG     TTTGGGTTAA      AAAA                                                  
AA                C    T  TCTAA     T   TCCTA         ATTAC          -----T    TAACCTCGAGCGCTGCAGGTTGTTTTTTTTGTGTGATCTTCCGTTCTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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