SE3520321

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6539
  • Mimulus guttatus
  • SE3520321
  • Mutator
  • M2
  • scaffold_14:6378416-6378881
  • TAATTTAAT
  • TAGGGTAAATTACGGCCACGCCCTGAGGTAGTAACAAATTACGAAAAACCCTTC

Secondary structure and sequence

TSD    TIR
5'



3'
TAATTTAA                   G           TAA              CC    CTATTA                               C        CG          C              TGGAATC         ATG      A     C         C      CCCC  -----------     -  T     T     ---------AA     T  T   CA
        TAGGGTAAATTACGGCCAC CCCTGAGGTAG   CAAATTACGAAAAA  CTTC      GGGTAATTACAACCATCCCTCAACTATGAAT TTCTTACA  TCCACCCTTG GGTGTCAAATTTAG       TTCTAGATT   TGGAAT TTCTC AGTTTGTAT TGTTTT    CA           TTTGA GC CCACA TTTGA           CAAGA GA CAT  
        ||||||||||||||||||| |||||||||||   ||||||||||||||  ||||      ||||||||||||||||||||||||||||||| ||||||||  |||||||||| ||||||||||||||       |||||||||   |||||| ||||| ||||||||| ||||||    ||           ||||| || ||||| |||||           ||||| || |||  G
        ATCCTATTTAATGCTGGTG GGGACTCCATT   GTTTAATGCTTTTT  GGAG      CCCATTAATGTTGGTGGGGAGTTGATACTTA AAGGATGT  AGGTGGGAAC CCACAGTTTAAGTT       AAGATTTAA   ACCTTA AAGAG TCAAACATG GCAAAA    GT           AGACT CG GGTGT AAACT           GTTCT CT GTG  
ATAATTTA                   -           CCA              TT    TACAAA                               A        AG          A              GTATAAA         GGA      C     A         A      -CAC  TTATACATCAA     A  T     T     ATAAATGTTCG     -  -   CA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End