Plant MITE

SE3520322

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6540
Mimulus guttatus
SE3520322
Mutator
M1
scaffold_8:20284725-20284975
AACAATATT
GAGTTTATTGCAATTAGTACCACTGTGTTATATCAAATTGCTAAAA

Secondary structure and sequence

TSD TIR

5'

3'

AACAATATTA                     AC           A           AAAA       C            A    AAC      A   ATCGATTTG     C  --CTCAC    AA
          GAGTTTATTGCAATTAGTACC  TGTGTTATATC AATTGCTAAAA    TATCCTG GTTATTTTATTG CAAG   CCCCCT TGA         TTTTA CA       TCCA  
          |||||||||||||||||||||  ||||||||||| |||||||||||    ||||||| |||||||||||| ||||   |||||| |||         ||||| ||       ||||   
          CTCAAATAACGTTAATCATGG  ACATAGTATAG TTAACGATTTT    ATGGGAT TAATAAAATAAC GTTT   GGGGGA ATT         AAAAT GT       GGGT  
ATTAAAACAA                     GA           C           -ATG       A            C    -AA      C   -AAATTCAA     C  TAATTAT    AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520322

AACAATATTAGAGTTTATTGCAATTAGTACCACTGTGTTATATCAAATTGCTAAAAAAAATATCCTGCGTTATTTTATTGACAAGAACCCCCCTATGAATCGATTTGTTTTACCACTCACTCCAAACATGGGTATTAATTGCTAAAAAACTTAAATTACAGGGGGAATTTGCCAATAAAATAATATAGGGTAGTATTTTAGCAATTCGATATGATACAAGGGTACTAATTGCAATAAACTCAACAAAATTA

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