SE3530324

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6542
  • Mimulus guttatus
  • SE3530324
  • hAT
  • Hat22
  • scaffold_6:16425788-16426401
  • GTTTGTAA
  • CAATGTTGTTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTTGTAA             ACCGG            ----     --     GTTCGACCGTGACCCGGCTTCGAAGCAGTCCGGTCTGACCTCTAAAACCGGAAAAAATGAAAACCGGGGTCAAATGACCAAAATCCGGTTCGACCGGGTAAAACCCGAGAACCGGCGAGTCAGTCAAAAAACCCGGTTTTCAGCCAAAATATCTCAAATCACCGCTAAGTTGGTTATTTATGACTAGATTTGAGTGAATCTTCAGGGGACTTAGTGATGGGTGGCCGGATCTAGTCATGAGTGGTCGAAGAATTGTCG
        CAATGTTGTTAGA     ACCGAACCGGCC    GGTCG  GACCG                                                                                                                                                                                                                                                                  
        |||||||||||||     ||||||||||||    |||||  |||||                                                                                                                                                                                                                                                                  G
        GTTACAACAGTCT     TGGCTTGGCCGG    TTGGC  GCTGG                                                                                                                                                                                                                                                                  
AATGTTTG             -----            TACC     CT     TAAACCCAGTGCCAAAATATCCCAGCTTGGCCAAGTTGGCCCAAAAACTAAAAAAAATTATATAGTAATAAAATAATTAAAATTATAAAATTTTTATAATAAAAGAAATGTAAAAATTAGAAGGTGTATAAGAAAAGTTAAAATAGTTAGAGTGTGGTGAAAAATGATGTAAAGAAAACGAATATAAGATATGAAAAGGTAAGAAATAAGAAGATTACGCCGTTAAGTGGTGGCGATAAGCTAGTGGGTACTGGCTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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