SE3520325

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6543
  • Mimulus guttatus
  • SE3520325
  • Mutator
  • M8
  • scaffold_4:4985713-4986069
  • ATAGTTGCA
  • TTGCAAGGGCAAATTACGGTAACCCCTGAGGTATGGTCAAATTACGAAAAGACCCCTCTTATTTTGGTAATTACAGTCACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAG      ----              AAC       G                   GA            T                 -------------- G    TTTTAAATATTTTTACATAAAATTTATGTAATTCGGTTATTTACCGAACCAAATCGTATATTTAGTTCGGTAAACGGTAT
    TTGCAA    GGGCAAATTACGGT   CCCTGAG TATGGTCAAATTACGAAAA  CCCCTCTTATTT GGTAATTACAGTCACCC              C CTCC                                                                                
    ||||||    ||||||||||||||   ||||||| |||||||||||||||||||  |||||||||||| |||||||||||||||||              | ||||                                                                                 
    AACGTT    CCCGTTTAATGCCG   GGGACTC ATACCAGTTTAATGCTTTT  GGGGAGGATAAA CCATTAATGTCGGTGGG              T AGAA                                                                                
          GATA              GTT       A                   GG            C                 TAGTTGATAAATAA -    TACTTTTCTGGGGAGGACTCCATTTAAATTCCTACAATTAAGCCATTTTGGCTTGGCTTTAAAGCCATGCGGTTGTAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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