SE3520327

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6545
  • Mimulus guttatus
  • SE3520327
  • Mutator
  • M9
  • scaffold_14:7762818-7763153
  • TATTTTTAT
  • TGGGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTTAT        -TTACAGCTTTCAT       A        --TA                                C   A       C     C   T         --C            C         A      ----   CATTAGTTAAGGCAATGAT
         TGGGGAAA              CCCTCAA TTTGCACC    TCACATTTGGTCCCTCATGTTCACAAAAAATA ATT GGTCCCT ATGTT CAA AATTTAACA   TTTTGGTCATTT CGTTAATTT CCGTTA    GCC                   
         ||||||||              ||||||| ||||||||    |||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||| |||||||||   |||||||||||| ||||||||| ||||||    |||                    
         ATCCCTTT              GGGAGTT AAACGTGG    AGTGTAAACCAGGGGGTACAAGTGTTTTTTAT TAA CCAGGGA TACAA GTT TTAAGTTGT   AAAATCAGTAAA GCAGTTAAA GGCAAT    ATT                   
 TTATTTTT        TTATCTCAAACACC       C        CTAA                                A   A       A     A   T         AAA            A         A      TTTG   GCCTTAGTTCGCACACAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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