SE3520330

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6548
  • Mimulus guttatus
  • SE3520330
  • Mutator
  • M2
  • scaffold_8:18739332-18739805
  • TAGATGTTT
  • AGATGTTTGGGTAAATTACGACCACCGCCCATGAGGTAAGGTCAAATTACGAAAAAAAACCATTCATGTTTGGATAATTACAACCACCCTCAACTATGAATCTTCTTACACGTCCATCATTGCGGTGTCAAATTTAGTGAAATTTTCTAGATTATATGGAATATTCTCCAGTTTGTACCCGTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
T        -            A   CC   CA                       AAA    A           A               --                             A   C              TGA         G   ATA            C         C      ACCCCATTC    TCCACATTTTGAAACAAGACAATCATAAAATGTTCCTGTTG
 AGATGTTT GGGTAAATTACG CCA  GCC  TGAGGTAAGGTCAAATTACGAAA   AACC TTCATGTTTGG TAATTACAACCACCC  TCAACTATGAATCTTCTTACACGTCCATC TTG GGTGTCAAATTTAG   AATTTTCTA ATT   TGGAATATTCTC AGTTTGTAC CGTTTT         GAGC                                         
 |||||||| |||||||||||| |||  |||  |||||||||||||||||||||||   |||| ||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||| ||| ||||||||||||||   ||||||||| |||   |||||||||||| ||||||||| ||||||         ||||                                         C
 TTTGTAGA CCCATTTAATGT GGT  TGG  ACTCCATTCCAGTTTAATGCTTT   TTGG GAGTACAAACC ATTAATGTTGGTGGG  AGTTGATACTTAGAAGAATGTGCAGGTGG AAT CCGCAGTTTAAGTT   TTAGAAGAT TAA   ACCTTATAAGAG TCAAACATG GCAAAA         CTTT                                         
         T            C   -A   --                       -CA    G           C               GA                             G   A              GTA         A   GGC            A         A      -----CACG    TACTTCAAAGACTACGTGGTGTTGTTAGACTGTATATGTTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End