Plant MITE

SE3510331

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6549
Mimulus guttatus
SE3510331
Tc1/Mariner
St3
scaffold_6:18701733-18702001
TA
TACTCCCTCCGTTTCAAAATAATTGTCGTTTTAGGTTGTT

Secondary structure and sequence

TSD TIR

5'

3'

    C   C         A             A  T    ---------------------G   A  TATTAAAAAACTAATAAATATGCGTGAATTTTAGGAAAATACATATAATATGACTAAAATACCCATGTAATTAATTAT
TACT CCT CGTTTCAAA TAATTGTCGTTTT GG TGTT                      CGC CA                                                                              
|||| ||| ||||||||| ||||||||||||| || ||||                      ||| ||                                                                               
ATGA GGA GCAAGGTTT ATTGACAGCGAAA CC ATAA                      AGT GA                                                                              
    A   A         A             -  T    AAAAGAACAAGATATAATAGAA   -  AATTTTTAAAGTTACTACGTAATTAATAACAAAAGAGTTGATACGTGAATAATAAATAATGAGAATTAATCAAGTCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510331

TACTCCCTCCGTTTCAAAATAATTGTCGTTTTAGGTTGTTGCGCACATATTAAAAAACTAATAAATATGCGTGAATTTTAGGAAAATACATATAATATGACTAAAATACCCATGTAATTAATTATATCTGAACTAATTAAGAGTAATAAATAATAAGTGCATAGTTGAGAAAACAATAATTAATGCATCATTGAAATTTTTAAAGTGAAAGATAATATAGAACAAGAAAAAATATCCAAAGCGACAGTTAATTTGGAACGAAGGAAGTA

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