SE3520332

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6550
  • Mimulus guttatus
  • SE3520332
  • Mutator
  • M2
  • scaffold_7:5028116-5028585
  • AATGAAATA
  • GGGTAAATTACGGCCACCTCCCTGAGGTAAGGTCAAATTACGAAAAAAAACCCTCATGTTTGGATAATTTCAACCACCCCTCAACTATGAATCTTCTTACACGTCCACCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
AATGAAATAA             C    TC                           AAA C   A       A     T          -            C           C      TATA    C     CAACAT             CC                             -----TG    AAAATGCAGTTTCTGATGCACCACAATCTGATATTTACAAGC
          GGGTAAATTACGG CACC  CCTGAGGTAAGGTCAAATTACGAAAAA   C CTC TGTTTGG TAATT CAACCACCCC TCAACTATGAAT TTCTTACACGT CACCCT    GTGT AAATT      AATCTTCTAGATT  GTGAAATGTTCTCTAGTTTGTACTCGTTT       TGCA                                          
          ||||||||||||| ||||  |||||||||||||||||||||||||||   | ||| ||||||| ||||| |||||||||| |||||||||||| ||||||||||| ||||||    |||| |||||      |||||||||||||  |||||||||||||||||||||||||||||       ||||                                          C
          CCCATTTAATGCC GTGG  GGACTCCATTCCAGTTTAATGTTTTTT   G GAG ATAAACC ATTAA GTTGGTGGGG AGTTGATGCTTA AAGAATGTGTA GTGGGA    CACA TTTAA      TTAGAAGATCTAA  CACTTTATAAGAGGTTAAATATGGGCAAA       AAGC                                          
AATAAAGTAA             A    --                           -CA A   G       C     T          G            A           A      TCAC    A     ATCACC             TA                             TGAAGGT    TCGAGGTGTAAATCTTGTTCTACTAGTATTCTACACAGAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3