SE3520335

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6553
  • Mimulus guttatus
  • SE3520335
  • Mutator
  • M41
  • scaffold_6:2873976-2874660
  • TATTTTAAA
  • AGGGCAAAGTTCAGTTTGCACCCCTGAATTATGGGGTATGCATCAAAGACCCCCCTGAATTACGAAATGTACCAAAATAGTCCCTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTAA    C     T                      GG                                         A        -  ATTTCCAATTCA    ----T     GCCAATGTGTCAAGTTGACTTTCTCAAATTAATATTTTTTGACATTTTTACCCCTAACTTGTTATATCTATATGTATAAAAATATACACAATTTATTTTATGTATAAAGATGAATATATTTTGCCCCATAATATTTTATATTTTCTTAAAATATTAATATAGTAAAATATTTAATTTATATTTTCATTTAGTTAATAATATTGTTCTCACACACTCATTATCATCTC
        AGGG AAAGT CAGTTTGCACCCCTGAATTATG  GTATGCATCAAAGACCCCCCTGAATTACGAAATGTACCAAA TAGTCCCT CT            TTTG     GGTGT                                                                                                                                                                                                                                   
        |||| ||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||| ||            ||||     |||||                                                                                                                                                                                                                                    
        TCCC TTTTA GTCAAACGTGGGGACTTAATAC  CATACGTAGTTTCTGGGGGGACTTAATGTTTTGCATGGTTT ATCGGGGA GG            ATCA     TAATT                                                                                                                                                                                                                                   
AAATTTTA    C     T                      AA                                         -        C  -------AAAAA    GTTTG     TTTTAATTGAGATGATCAAAACCCGCACTTTAATGGAAAAATGGGAATAATGATAATATATATAATATAAATAAAAAATAAAAAAGAAACGGGGTTATATTCAAGAAACGTGTAGATAGAAAGAGGTTTTAACTCAAGAAGTTTTCTGTTTTGTTCGAGTATTTATTTTAAGATTAGAATCCGCTATTTAAATAATACTCTATTTAGAATTAAAACCTGTTTGTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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