SE3530337

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6555
  • Mimulus guttatus
  • SE3530337
  • hAT
  • Hat9
  • scaffold_11:3080229-3080683
  • ATTATGCC
  • CAGTGGCGGAGCCACCCTTTGGCAAGGGTGGGCTCCAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATGCC              -CCC     -CA          CC   CCACTCTCATTATTTAAAAATTTATAC       TATATCTATATATAATTAGCCCCCCAAATAGTTTAATTTAGCCCACCCAAGTAATTTAGTTTAGCTTATCTATCAAAAAATTTATGTTATATTAGTTGAAATTTATAATTTGTGGTTATTTTATGCTATTTTATGTTAATGAATAAAAAAAA
        CAGTGGCGGAGCCA    TTTGG   AGGGTGGGCT  AGC                           TATATAT                                                                                                                                                        
        ||||||||||||||    |||||   ||||||||||  |||                           |||||||                                                                                                                                                        A
        GTCACCGCCTCGGT    AAGCT   TCCCACCCGA  TTG                           CCCCCGT                                                                                                                                                        
CCGTATTA              CCTT     CTG          -A   -------------TAATTGCCCCCAAC       CGCGGGGGCTAAAAAAAAAAAAACTAAGTAAGTGTATTTTTATATCGTGTTTTATTGATGTTTAAATATTTGAATTTGATTATATTCGATATAATTTAATGAACCCACCCACCCGAATTGTAACTGCCCCAAGCCCCCGTCGCGGGGGCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3