SE3520338

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6556
  • Mimulus guttatus
  • SE3520338
  • Mutator
  • M8
  • scaffold_10:8844310-8844669
  • TACAATATA
  • TAGGGCAAATTACGGCCACCCCCCTGAGGTATGGCTAAATTACGAAAAGACCCCTTTTGTTTGGGTAATTACAGCCACCCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TACAATA                  C       A G   G C             GA                                 ------CCTTTTA   ATTT  ACATAAAATTTATGTAATTCGGTTATTTACCGAACCAAATCGTATATTTAGTTCGGTAAACGGTATGAAATGT
       TAGGGCAAATTACGGCCA CCCCCTG G TAT G TAAATTACGAAAA  CCCCTTTTGTTTGGGTAATTACAGCCACCCCCT             AAT    TT                                                                         
       |||||||||||||||||| ||||||| | ||| | |||||||||||||  |||||||||||||||||||||||||||||||||             |||    ||                                                                          
       ATCCCGTTTAATGCCGGT GGGGGAC C ATA C GTTTAATGCTTTT  GGGGAGGATAAACCCATTAATGTCGGTGGGGGG             TAG    AA                                                                         
ATATAAC                  T       G A   A A             GG                                 AGTTGATACATAA   ----  TGCTTTTCTGGGGAGGTCTCCATTTAAATCCCTACAAATAAGCCATTTTGGCTTAGCTTCAAAGTCATGCGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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