SE3520339

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6557
  • Mimulus guttatus
  • SE3520339
  • Mutator
  • M14
  • scaffold_14:8638081-8638334
  • TATATTTTA
  • AAATTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATATTTTAGATTAAA         -GCAAC     T AC     C  T      -C         CCC  G     -TAT           -  CCC    A   A              GAA       TT
                AAATTACAA      CCCTG G  AAGGT TA TTACAA  AAAACCCCT   TC TTTTT    AATTACATTCA CC   TGCA TTT TAAATTTCTTACAT   CACCCTT  
                |||||||||      ||||| |  ||||| || ||||||  |||||||||   || |||||    ||||||||||| ||   |||| ||| ||||||||||||||   |||||||   
                TTTAATGTT      GGGAC C  TTTCA AT AATGTT  TTTTGGGGA   AG AAAAA    TTAATGTAGGT GG   ACGT AAA ATTTAAAGAATGTA   GTGGGGA  
  TATTTTATATCCCA         GATATA     T CA     C  T      TA         ---  -     CTCT           C  TAA    C   C              --G       TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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