SE3520340

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6558
  • Mimulus guttatus
  • SE3520340
  • Mutator
  • M8
  • scaffold_12:11945793-11946265
  • TAATTATTA
  • TAATTATTAGGGTAAATTGCAACCACCCCTGAAGTATGGTCAAATTACGAAAAACCCCCTCTTATTAGGGTAATTATAACCACCCTTCAACTATAATTTTTCCCGACAT

Secondary structure and sequence

TSD    TIR
5'



3'
    T                     - -     A       C           AA         A  A        A                    T     CCG    CTCC      A    G       CAACAT    A  T   ---   C   -      GC  TAG         T      -   AAAATACAGTTTATGATGCACCACAATATTATATATACAAGCCAA
TAAT ATTAGGGTAAATTGCAACCAC C CCTGA GTATGGT AAATTACGAAA  CCCCCTCTT TT GGGTAATT TAACCACCCTTCAACTATAA TTTTC   ACAT    ATCCTT TGGT TCAAATT      AATC TC AGA   TAT GTG GAATGT  TC   TTTGTACTC TTTTGT GTA                                             
|||| ||||||||||||||||||||| | ||||| ||||||| |||||||||||  ||||||||| || |||||||| |||||||||||||||||||| |||||   ||||    |||||| |||| |||||||      |||| || |||   ||| ||| ||||||  ||   ||||||||| |||||| |||                                             A
ATTA TAATCCCATTTAATGTTGGTG G GGACT CATACCA TTTAATGCTTT  GGGGGAGAA AA CCCATTAA GTTGGTGGGGAGTTGATATT AGAAG   TGTG    TGGGAA GCCG AGTTTAA      TTAG AG TCT   ATA CAT CTTATA  AG   AAACATGGG AAAATA GGT                                             
    T                     A A     C       A           TG         C  A        A                    T     -AA    CAAC      C    A       ATCACC    A  T   AAT   A   A      AT  TGA         C      G   AAGCTTGAGGTGTAAAACTTTGTTCTACTAGCATTATACACAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End