SE3520343

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6561
  • Mimulus guttatus
  • SE3520343
  • Mutator
  • M3
  • scaffold_10:13218620-13219053
  • TATATATAT
  • TATATATATGGGTAAATTACACCCACACCCCTGAGGTATGCTTATATAATTTTAAGGTCCCTGTGGTATCGATAATTACACTCACCCCCCTGAAACGTAGTTAGAAACTCTAACGGGATAATGCATTGGATGCATTATTCCGATAGGGTTCTAATGGACTATTAATTTTAGCTAGTGGTGGAGATAACCTAGAGTTATGGGGTGACATGG

Secondary structure and sequence

TSD    TIR
5'



3'
         T                                   T                                            C             G         C  G               CA     CC                      AA      CT               CT           G   ----------CA   CT
 TATATATA GGGTAAATTACACCCACACCCCTGAGGTATGCTTA ATAATTTTAAGGTCCCTGTGGTATCGATAATTACACTCACCCCC TGAAACGTAGTTA AAACTCTAA GG ATAATGCATTGGATG  TTATT  GATAGGGTTCTAATGGACTATT  TTTTAG  AGTGGTGGAGATAAC  AGAGTTATGGG TGA            TGG  
 |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||||||||||||||  |||||  ||||||||||||||||||||||  ||||||  |||||||||||||||  ||||||||||| |||            |||  C
 ATATATAT CCCATTTAATGTGGGTGTGGGGACTCCATACGAAT TATTGAAATTCCAGGGACACCATAGCTATTAATGTGAGTGGGGG ACTTTGCATCAAT TTTGAGATT CC TATTACGTAACCTAT  AATAA  CTATCTCAAGATTGCCTGATAA  AAAGTC  TCACCACCTCTGTTG  TCTCAATACCC ACT            ACC  
T        -                                   T                                            A             A         A  G               TC     TA                      CC      CT               TT           -   AAATTCTTTATA   CC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End