SE3520344

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6562
  • Mimulus guttatus
  • SE3520344
  • Mutator
  • M3
  • scaffold_5:16120450-16120900
  • TATTAATTA
  • TTAATTAGGGTAAATTACACCTACACCTCTAAGGTGTGCTAAAATAACTTTAAAGTCCATGTAGTATCGGTAATTACAATCACCCCCTAAAACA

Secondary structure and sequence

TSD    TIR
5'



3'
 TA     T              C   AC    A         A            A    A    G   C          A    -   -------  A     ----TT   -   -- AC     - ---      --  ACATTGGATAAGTTATTCCGTTAGGTTCTAACGGACTATTAGTTTCAGGCAGTGGTGGAGACAAAATAGAGCCAGGGGCTGACATGGCTCTCCTA
   TTAAT AGGGTAAATTACAC TAC  CTCT AGGTGTGCT AAATAACTTTAA GTCC TGTA TAT GGTAATTACA TCAC CCC       CT AAACA      GTT AGA  A  CCTAA C   GGAATA  AT                                                                                               
   ||||| |||||||||||||| |||  |||| ||||||||| |||||||||||| |||| |||| ||| |||||||||| |||| |||       || |||||      ||| |||  |  ||||| |   ||||||  ||                                                                                                
   AATTA TCCCATTTAATGTG ATG  GGGA TCCATACGA TTTATTGAAGTT CAGG ACAT ATA CCATTAATGT GGTG GGG       GA TTTGT      CCT GGT  T  AAAGT C   ACCACT  CT                                                                                               
ATA     -              T   CA    C         C            C    G    A   A          C    T   CACTTCC  C     TAATGA   C   TC --     G AGG      GG  ATACGTGATAGAAACAAAAGGCGCCCCAGCAATATTACGATGGTATCTGCTTTTAAATATTTAGAATATATTCTGTTATTCCTAAATTCTTTACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End