SE3520345

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6563
  • Mimulus guttatus
  • SE3520345
  • Mutator
  • M8
  • scaffold_13:6110116-6110465
  • GGGCAAATT
  • GGGCAAATTACGGCCACCCCTGAGCTATGGTCAAATTACGAAAAACCCCCTCATGTTTGGGTAATTACAGTCACCCCTCAATTATGTATTTATCTTACGAAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
                C            C      GC                    C C    A              C         -  -AA   T      ATC     -     AC    CC   GGTAAATTTAGGGATGTTAATTCGGTAAAACTGGACCAAACTTTCGGTACGCCA
             GGG AAATTACGGCCA CCCTGA  TATGGTCAAATTACGAAAAA C CCTC TGTTTGGGTAATTA AGTCACCCC TC   TTA GTATTT   TTACG AAAAT  CCCT  AGA                                                      
             ||| |||||||||||| ||||||  |||||||||||||||||||| | |||| |||||||||||||| ||||||||| ||   ||| ||||||   ||||| |||||  ||||  |||                                                      A
             CCC TTTAATGCCGGT GGGACT  ATACCAGTTTAATGCTTTTT G GGAG ATAAACCCATTAAT TCGGTGGGG AG   AAT TATAAA   AATGC TTTTA  TACA  TTA                                                      
AACTTATTTTAAT   T            T      AC                    T A    A              T         G  GAA   T      ---     A     AA    --   AGCCAATAAATGGTTTGGTTTAGCATATAAATCAAGCCATTTGCCATACGTTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End