Plant MITE

SE3520346

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6564
Mimulus guttatus
SE3520346
Mutator
M3
scaffold_14:9063188-9063464
TATTATTTA
TAGGGTAATTACACCCACACCCCTGTGGTATGCTTAAATAATTTTAAGGTCCTTATGGTATCGATAATAACACTCACCCCCTGAAACGTAGTTAGAAACCCTAACGTGATAATGCATTGAAT

Secondary structure and sequence

TSD TIR

5'

3'

TATTATT        -                 T                            A        A    A   C    C - C             G    C    C T            -   ACATTATT  GA
       TAGGGTAA TTACACCCACACCCCTG GGTATGCTTAAATAATTTTAAGGTCCTT TGGTATCG TAAT ACA TCAC C C TGAAACGTAGTTA AAAC CTAA G GATAATGCATTG AAT        CC  
       |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| ||| |||| | | ||||||||||||| |||| |||| | |||||||||||| |||        ||   
       ATCCCATT AATGTGGGTGTGGGGAC CCATACGAATTTATTGAAATTCCAGGGA ACCATAGC ATTA TGT AGTG G G ACTTTGCATCAAT TTTG GATT C CTATTACGTAAC TTG        GG  
ATTTATT        T                 T                            C        C    A   A    A T A             A    A    A C            C   --------  AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520346

TATTATTTAGGGTAATTACACCCACACCCCTGTGGTATGCTTAAATAATTTTAAGGTCCTTATGGTATCGATAATAACACTCACCCCCTGAAACGTAGTTAGAAACCCTAACGTGATAATGCATTGAATACATTATTCCGATAGGGTTCCAATGCATTATCCCATTAGAGTTTATAACTACGTTTCAAGTGAGTGAATGTAATTACCGATACCACAGGGACCTTAAAGTTATTTAAGCATACCTCAGGGGTGTGGGTGTAATTTACCCTATTATTTA

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