SE3520348

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6566
  • Mimulus guttatus
  • SE3520348
  • Mutator
  • M2
  • scaffold_7:953598-954038
  • TAATAATAA
  • AGGGTAAATTACAACCACCCCCTGAGGTATGGTCAAATTACAAAATCCCCCCTCATGTTTGGGTAATTACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATAATA                      -              A   CA   T        A  T             ACCAC       AACCATAAATCTTCTAACAC  CCACCCTTGCGGTTTCAAATTTAGTGGAATCTTTGAGATTATATGGAATATTATCACTTTTGTACCCATTTTATCCCATTCGAACTCCACATTTAGAAGCAAAATGATCATAATAT
        AGGGTAAATTACAACCACCCCC TGAGGTATGGTCAA TTA  AAA CCCCCCTC TG TTGGGTAATTACA     CCCCCTC                    GT                                                                                                                    
        |||||||||||||||||||||| |||||||||||||| |||  ||| |||||||| || |||||||||||||     |||||||                    ||                                                                                                                    G
        TCCCATTTAATGTTGGTGGGGG ACTCCATACCAGTT AAT  TTT GGGGGGAG AC AACCTATTAATGT     GGGGGAG                    CC                                                                                                                    
AATAATAA                      G              A   TA   T        A  C             -AGAT       ------------------AA  ACAGTTTAAGTTGTATTAGTAGATCTAAAGCACCTTACACGAGATTAAACATGAGCAAAACACATTTTTATGTCAAAGACTACGTGGTGTTAGAATATATATGTTCGGTTTTTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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