SE3550349

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6567
  • Mimulus guttatus
  • SE3550349
  • PIF/harbinger
  • To2
  • scaffold_12:25787091-25787331
  • TTA
  • AGGCCTCGTTTGGTTAGGAAGATTAGTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               ----   -           ---TTAT     AAATAGTTGGAAACATCTTTGATGTTTGGTATCCCCAATAACTTGCCGGGTCGACCCGCAAATTCTATGTTATCAT
  AGGCCTCGTTTGGTT    AGG AAGATTAGTCA       TAACT                                                                            
  |||||||||||||||    ||| |||||||||||       |||||                                                                            G
  TCCGGAGCAAACCAA    TCT TTCTAATCGGT       TAATT                                                                            
AT               CAGT   A           TCTATTC     CATTAGATTATTTTGAGTTAACATAATAACCTGGAACCTCCTAGGTTATTTTTGTACGGATCTTCCGTTCTATTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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