SE3520350

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6568
  • Mimulus guttatus
  • SE3520350
  • Mutator
  • M19
  • scaffold_9:9886084-9886831
  • TATTTTTTT
  • GGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAACAAATTAATAGCACTTTGCACCCTCGAAATACAATAAATCAGGCATAATGCACCCCAAATGAATTTTTAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTTTT                                                                                                    GG            CA   -    TTT     -      -- A   AATTTAATATTTTTAGTGATATTTTTTTTAGGATGTCAAATGTCAAATATTTTTTTTATTCATCAATCATTTTGAAACTATAAAGTTCAAAAATAAAAATAAATTTTATCTATATATTAATTTTTTATTTATTTATCAAATATCAAATATTTTACGGAAAAAAATCATTCAACTATTCCGTTTTCAAGTAATCTGAAAGTCATATTTTCTTCCAAGTATTTT
         GGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAACAAATTAATAGCACTTTGCACCCTCGAAATACAATAAATCA  CATAATGCACCC  AAT GAAT   TAAAG CTAAAA  A TGT                                                                                                                                                                                                                              
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||| ||||   ||||| ||||||  | |||                                                                                                                                                                                                                               
         CCGAATTAAGGTGAAACGTGGGAACTTTATATGGTAAAACCGTGAAACGTGGGAGCTTTGTTTAATTATTGTGAAACGTGGGAGTTTTGTGTTATTTAGT  GTGTTACGTGGG  TTA CTTA   ATTTC GTTAAA  A AAA                                                                                                                                                                                                                              
TTTTTTTAT                                                                                                    AA            AC   A    -TT     C      GT -   AGTAACCATAAAAAAAAGCCCCACGTTTTATTTTTTTATTTAACAATAAAAGAACTTGGAGGTTGGATTAAAGCTCGCCTGTTTCACGCTTTTTTATTTTTAATGTGGCCTAATAAATTTTGTGGATGTAAAAGAATGTTTTATTTTTTATTTTTTATTCAAAAATAGTGATTTAATAAGCTAACTACCTCGAAAATACATTGACAAACTTTTATAATCCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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