SE3550351

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6569
  • Mimulus guttatus
  • SE3550351
  • PIF/harbinger
  • To2
  • scaffold_14:19985270-19985495
  • TAA
  • AGGCCTCGTTTGGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                CCAA    AGCTTAAATAATCTAATAAA       TATATTATTGGACCTTCGATGATCCAATAAAAAACATGCCTACAAGGCAAGATAAGTCACCATAACATAAT
  AGGCCTCGTTTGGTTG    GAGA                    CCCCAAT                                                                       
  ||||||||||||||||    ||||                    |||||||                                                                        
  TCCGGAGCAAACCAAC    CTCT                    AATCAGT                                                                       
AA                --CC    --------------------       ACTAATTGATTTATTAACCTGAAACAAACTACAAACTATAGGGGTTATTGAACGGCCCAGCTAGGTGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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