Plant MITE

SE3530352

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6570
Mimulus guttatus
SE3530352
hAT
Hat23
scaffold_2312:3529-3886
GTCAGAAG
TCAGAAGCAGTGGCGGATCCAG

Secondary structure and sequence

TSD TIR

5'

3'

 G  A  AG            C  ---------      TGC   GGGGGTGCTAAATTGTAGAATAAAAAAATTAAATATCACTTTATAAAAATAGTGGACCAAAAATTTACAATTTAAAAATTTTAGGTGAATTGTGTAAATATTTAAAAAGAAAAAGGGTGAAAAATGTAAAGATTTGAAAAA
  TC GA  CAGTGGCGGATC AG         GATTTT   CAA                                                                                                                                             
  || ||  |||||||||||| ||         ||||||   |||                                                                                                                                              
  AG CT  GTCACCGCCTGG TC         TCCCAC   ACG                                                                                                                                             
GA  A  -G            A  GATACCAGA      ---   TCAACGTGTGGGAACTAAAATTTGTTTATTATGGCAATATGTATTCAACTGTTCTTTTCGTCAACCAACTCAACCATTTCTACAAGGAAGTAAACAATAAACCAGGGCCCAAGCTTGGGGGTCGGACATTTTTCGACTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530352

GTCAGAAGCAGTGGCGGATCCAGGATTTTTGCCAAGGGGGTGCTAAATTGTAGAATAAAAAAATTAAATATCACTTTATAAAAATAGTGGACCAAAAATTTACAATTTAAAAATTTTAGGTGAATTGTGTAAATATTTAAAAAGAAAAAGGGTGAAAAATGTAAAGATTTGAAAAAAAATCAGCTTTTTACAGGCTGGGGGTTCGAACCCGGGACCAAATAACAAATGAAGGAACATCTTTACCAACTCAACCAACTGCTTTTCTTGTCAACTTATGTATAACGGTATTATTTGTTTAAAATCAAGGGTGTGCAACTGCACACCCTAGACCATAGCTAGGTCCGCCACTGGTCAGAAG

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