SE3550353

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6571
  • Mimulus guttatus
  • SE3550353
  • PIF/harbinger
  • To2
  • scaffold_11:9567104-9567340
  • CAA
  • GGCCTCGTTTGGTTGCCAAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAA               CC     A     AAATAATCTAATGAAACCCAATTATTTTATTGGAGCTTGGAAGGTCCAACAAAAGAACATGTTTAGAAGGCAAGATAAACCATGATA
   GGCCTCGTTTGGTTG  AAGAT AGATT                                                                                       
   |||||||||||||||  ||||| |||||                                                                                       A
   CCGGAGCAAACCAAC  TTCTA TCGGT                                                                                       
AAC               CC     A     ACTAATTAATTTATCATCCTGAAACAAACTACAAACCATAGGGGTTATTGAATGGCCCAGCTGGGCGTTTATAATACAATAGTACTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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