SE3520354

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6572
  • Mimulus guttatus
  • SE3520354
  • Mutator
  • M5
  • scaffold_13:1259765-1260123
  • ATTATTTTA
  • GGGTAAATTACAAAACCCCCCTGAACTTGGGCTAAATAACGAAAAAAACGCCCACCTATTCTTAATTACCAAAAACCCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATTTTA           -    C                              A  GC      A   T    T       A  C   ------    TTTGTTTCCGTCTTACACCAACCCCTTACATTGTGACTTTTCATGGATTTTTTTTAATTACAGGGAATGAATCTACACAATT
         GGGTAAATTAC AAAA CCCCCTGAACTTGGGCTAAATAACGAAAAA AC  CCACCT TTC TAAT ACCAAAA CC CCT      AAAG                                                                                  
         ||||||||||| |||| |||||||||||||||||||||||||||||| ||  |||||| ||| |||| ||||||| || |||      ||||                                                                                   
         CCCATTTAATG TTTT GGGGGACTTGAATCCGATTTATTGCTTTTT TG  GGTGGA AGG ATTA TGGTTTT GG GGA      TTGA                                                                                  
AGTTTATTA           C    T                              G  GA      C   C    T       A  A   GACTAA    CAACTAGCTCAAAAAATGTCTTTTACACATGTCAGATAATATGGAAGATAATTTATCCACTCTTTATTTTCTTTTATAGACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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