Plant MITE

SE3520355

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6573
Mimulus guttatus
SE3520355
Mutator
M8
scaffold_10:8844310-8844669
TATATTGTA
TATATTGTAGGGCAAATTACGGCCAACCCCCTGCGTTATTGTCAAATTACGAAAACCCCCCT

Secondary structure and sequence

TSD TIR

5'

3'

    T                    A       C T   T  C            CC     CCTA                       C  -----------AA   T  A   TCTTACGAAAAGACCCCTCCAGAGGTAAATTTAGGGATGTTTATTCGGTAAAACCGAATCGAAGTTTCAGTA
TATA TGTAGGGCAAATTACGGCCA CCCCCTG G TAT GT AAATTACGAAAA  CCCCT    TTTGGGTAATTACAGCCACCCCC TC             CTA GT TTA                                                                        
|||| |||||||||||||||||||| ||||||| | ||| || ||||||||||||  |||||    ||||||||||||||||||||||| ||             ||| || |||                                                                         
ATGT ATATCCCGTTTAATGCCGGT GGGGGAC C ATA CG TTTAATGCTTTT  GGGGA    AAACCCATTAATGTCGGTGGGGG AG             AAT GT ATT                                                                        
    T                    G       T C   C  A            CT     AAAC                       -  GAAAATTTATAAA   -  -   TTAAATACATTAAGCCAATAAATGGCTTGGTTTAGCATATAAATCAAGCCATTTGCCATACTTTACAACCGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520355

TATATTGTAGGGCAAATTACGGCCAACCCCCTGCGTTATTGTCAAATTACGAAAACCCCCCTCCTATTTGGGTAATTACAGCCACCCCCCTCAACTATGTATTATCTTACGAAAAGACCCCTCCAGAGGTAAATTTAGGGATGTTTATTCGGTAAAACCGAATCGAAGTTTCAGTACGCCAACATTTCATACCGTTTACCGAACTAAATATACGATTTGGTTCGGTAAATAACCGAATTACATAAATTTTATGTAAAAATATTTAAAAGGAGGGGGTGGCTGTAATTACCCAAACAAAAGGGGTCTTTTCGTAATTTAGCCATACCTCAGGGGGGTGGCCGTAATTTGCCCTATATTGTA

Copy Cancel