SE3520356

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6574
  • Mimulus guttatus
  • SE3520356
  • Mutator
  • M9
  • scaffold_7:11557416-11557781
  • ACGGGAAAT
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
                  ACGG    TT   AGTTTTCATCCCTCAAGTTTGCAATAATTTCACATTTGGTCCCCATTTTCACAGAAAACACATTTGGTCCCTTATGTTTCAATAATTTGACATTTTTGGTCATTTCCGACAATTTACCCGTAGTCCGCCAGTTATGGTAGTGACGGACACATGTTTGATTCC
                      GAAA  TAC                                                                                                                                                                  
                      ||||  |||                                                                                                                                                                   
                      GAAA  AGG                                                                                                                                                                  
TGTATAAATGAAAGTAACCACC    --   AAAATTGACCTTTTCTTGTATTGACTTTTTATGTCAAAAGTGGAGAGTTCAAACCTGGTTAAGGTATCAACCAGAAGGTACAAATTTTTTTTGTAAACCAGGGAATACAAAGTTTTTAAGTTCTAACAATCAGTAAAAGCAGTTAAAAGACAATTTTGATTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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