SE3520357

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6575
  • Mimulus guttatus
  • SE3520357
  • Mutator
  • M25
  • scaffold_8:19141999-19142459
  • TTCCTTGAA
  • TGAAGGGGCATGCTAAATCCCACACTAAAATTTACTAAATCCCACACATAAATTAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTCCT G       ----                  AAA           CCA    TAA        -AAAA        ---------------------      AAAT     --   -  TTATCTCTAAAATTATTTTATCCAACTCACTCAAAATTCATTAATTTCTT   T  ATAATCATAAAAAATGAGTTCCGTTTTATTTAATATTTATTAAATTTCATTAAGCGTTTTTAAATATTCAAATTCATATCAATTCGAATATTTTCC
     T AAGGGGC    ATGCTAAATCCCACACTA   TTTACTAAATC   CACA   ATTAAAAA     ATCTCTCT                     CTACCC    TATCT  CTA AC                                                  ACG GA                                                                                                
     | |||||||    ||||||||||||||||||   |||||||||||   ||||   ||||||||     ||||||||                     ||||||    |||||  ||| ||                                                  ||| ||                                                                                                 
     A TTCCTTG    TACGATTTAGGGTGTGAT   AAATGGTTTAG   GTGT   TGATTTTT     TAGAGAGG                     GGTGGG    AAGAA  AGG AT                                                  TAA AA                                                                                                
    A G       ACTT                  --A           TAC    ---        ATAAA        TTTTAGAAGAAAAGAGGAAAG      ----     AA   G  --------------------------------------------------   -  AAAGTGTTTTAGTGTCTGATTTTTGTAGGGATTGTAAGGTTCAAGCTTAAACTATTTTTAGGTGTACAAGTTTTGATTTTATTTCAACCTTAAACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End