Plant MITE

SE3520359

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6577
Mimulus guttatus
SE3520359
Mutator
M9
scaffold_4:15034061-15034395
TCATTGTTA
GGAAAAATACAGTTTTGTTTCCTCAAGTTTGCACCGATTTCACATTTGGTCCTCATGTTTACAAAAAACACATTTGGTCCCTCATGTTTCAATAATTCAACACTTTTAGTCATTTCCGTCAA

Secondary structure and sequence

TSD TIR

5'

3'

TCATTGTTATC     AA         GT              A C                   -                                  T        C         A   A   C      --- T      - TGTACTAATGGAATCAAGCGTGT
           GGAAA  TACAGTTTT  TTCCTCAAGTTTGC C GATTTCACATTTGGTCCTC ATGTTTACAAAAAACACATTTGGTCCCTCATGTT CAATAATT AACACTTTT GTC TTT CGTCAA   G TTTCGT T                       
           |||||  |||||||||  |||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| ||| ||||||   | |||||| |                        
           CCTTT  ATGTCAAAA  AGGGAGTTCAAACG G CTAAAGTGTAAACCAGGGG TACAAATGTTTTTTGTGTAAACCAGGGAGTACAA GTTATTAA TTGTGAGAA CAG AAA GCGGTT   T GCAATG G                       
TATTGTTACTC     AA         GT              C A                   G                                  T        A         G   G   A      AAA G      A GCAGTCAATTCCGTCACTACCCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520359

TCATTGTTATCGGAAAAATACAGTTTTGTTTCCTCAAGTTTGCACCGATTTCACATTTGGTCCTCATGTTTACAAAAAACACATTTGGTCCCTCATGTTTCAATAATTCAACACTTTTAGTCATTTCCGTCAAGTTTTCGTTTGTACTAATGGAATCAAGCGTGTGCCCATCACTGCCTTAACTGACGGAGTAACGGTAAATTGGCGAAAAGGACGAAGAGTGTTAAATTATTGTAACATGAGGGACCAAATGTGTTTTTTGTAAACATGGGGGACCAAATGTGAAATCAGCGCAAACTTGAGGGATGAAAACTGTAAATTTCCCTCATTGTTAT

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