SE3550360

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6578
  • Mimulus guttatus
  • SE3550360
  • PIF/harbinger
  • To1
  • scaffold_9:2714935-2715505
  • TGA
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
                  TG     -        AAAAGCTTTTTAAAAGTGATTATGAGCTTTTTTTTTTTTTGCTTATAATCTGTTTTTAGGTGCTCCTAGAATCAAACTTTTGCTTTTGCATCTTAAAATAATCTGCTTCAAGCTATTTTTCTAAAAGCATCCATAAACCTGCTTTTTCTATTTAAGTTTATTTTCCGGAATATGTGCAAACACTCCTAAGGTGGCGTTTGCAAACGCTTAATTAAATGCATAAGTTATGGATTGTGAGTTAATTTGGTTTTAAGTGCTTAT
                    AGGTG GTGTTTGC                                                                                                                                                                                                                                                                     
                    ||||| ||||||||                                                                                                                                                                                                                                                                      
                    GAATA CTTTTCGT                                                                                                                                                                                                                                                                     
AGTCCACCACAAACGTTTTC     A        CTTCAATCACTAACACTCAATTTAACCAAAATTCACGAATAAAGATGTTCAATCCACCACAAACGTTTTCGAAAATGTTTATCTAATACTGGAAAAAAAAAACGAGTATTAGATAAAAATTCACAAACGTTTTACTTGAAAACTAAAACGAAGAGAATTTTATTCGTAGAAATTCAATATTGAACAATTCGTGGGTACTAGGACGAAAAAGATAAATTTAAATAAAAGGTCACTTAAACGTTTGTGGAGTTTGAAAATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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