Plant MITE

SE3520361

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6579
Mimulus guttatus
SE3520361
Mutator
M2
scaffold_6:13618063-13618416
TTTATATTA
TATATTAGGGCAAATTACGGCCACCCCTGAGCTATGGTCAAATTACGAAAAAACCCCTCCTGTTTGGGTAATTACAGCCACCCATTCA

Secondary structure and sequence

TSD TIR

5'

3'

 TT    TT                         C                    AC C   C              C        A    -------ACTAT     G  TTACGAAAATACCCCTCCAGAGGTAAATTAAGGAATGTTAAATCGGTAAAAACCGAATCGAAATTTCGGTAC
   TATA  AGGGCAAATTACGGCCACCCCTGAG TATGGTCAAATTACGAAAAA  C CTC TGTTTGGGTAATTA AGCCACCC TTCA            GTATT TC                                                                        
   ||||  ||||||||||||||||||||||||| ||||||||||||||||||||  | ||| |||||||||||||| |||||||| ||||            ||||| ||                                                                         
   ATAT  TCCCGTTTAATGCCGGTGGGGACTC ATACTGGTTTAATGCTTTTT  G GAG ACAAACCCATTAAT TCGGTGGG GAGT            AATGT AT                                                                        
ATT    -T                         T                    -A A   A              A        -    AAAAATTATAAA     -  TTTAAATACATTAAGCAAATAAATGGCTTGGTTTAGCATATAAGTCAGGCCATTTGTCATACTTTACAACCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520361

TTTATATTAGGGCAAATTACGGCCACCCCTGAGCTATGGTCAAATTACGAAAAAACCCCTCCTGTTTGGGTAATTACAGCCACCCATTCAACTATGTATTGTCTTACGAAAATACCCCTCCAGAGGTAAATTAAGGAATGTTAAATCGGTAAAAACCGAATCGAAATTTCGGTACGCCAACATTTCATACTGTTTACCGGACTGAATATACGATTTGGTTCGGTAAATAAACGAATTACATAAATTTTATGTAAAAATATTAAAAATGAGGGGTGGCTATAATTACCCAAACAAGAGAGATTTTTCGTAATTTGGTCATATCTCAGGGGTGGCCGTAATTTGCCCTTTATATTA

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