Plant MITE

SE3550362

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6580
Mimulus guttatus
SE3550362
PIF/harbinger
To1
scaffold_3:12553176-12553460
TTA
AGGTGGTGTTTGCAAAAGC

Secondary structure and sequence

TSD TIR

5'

3'

TT                ------------   TTTTTGAA       A      -------    TTT       AA    ---TTTTCA            ATTAACTTT  ---------    TACTTCTCTTAACATAATCTGCTTTAAACTATGT
  AGGTGGTGTTTGCAAA            AGC        AGTGATT TGAGTT       TTTT   TGCTTAT  TCTG         GGTGTTTGCAAA         TG         CTTT                                  
  ||||||||||||||||            |||        ||||||| ||||||       ||||   |||||||  ||||         ||||||||||||         ||         ||||                                  T
  TCCACCACAAACGTTT            TCG        TCACTAA ACTCAA       AAAA   ACGAATA  AGAT         CCACAAACGTTT         GG         TGAA                                  
AT                ACTAATAAATTT   -TCTCCAA       C      TTCAGTC    TTC       -A    TTTCAACCC            -----ATAA  CCTTTTACT    TTTATCTTTTTCGTCCCAATCCCCACGAAAATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550362

TTAGGTGGTGTTTGCAAAAGCTTTTTGAAAGTGATTATGAGTTTTTTTTTTGCTTATAATCTGTTTTCAGGTGTTTGCAAAATTAACTTTTGCTTTTACTTCTCTTAACATAATCTGCTTTAAACTATGTTTTTAAAAGCACCCCTAACCCTGCTTTTTCTATTTAAGTTCATTTTCCGGAATATTTGCAAACACCCCCAACTTTTAGAAATAAGCACTTAAAACTGACTTAACTCACAATCACTAACCTCTGCTTTTAAATAATCATTTGCAAACACCACCTTA

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