Plant MITE

SE3520364

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6582
Mimulus guttatus
SE3520364
Mutator
M16
scaffold_11:16793951-16794159
TTATGAAAA
AAGATTTGTTCGACCCTACACCCGGTGAAAAACACCGGGTGGGTCTTCTGCTGCCACGTGTCTTTTCTTTGTATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TTATGAA   A   G                        CAC        T           A    -      C     A    ATAA    TT   CGCT   GT
       AAG TTT TTCGACCCTACACCCGGTGAAAAA   CGGGTGGG CTTCTGCTGCC CGTG TCTTTT TTTGT TTTT    TAGA  CCC    AGG  
       ||| ||| ||||||||||||||||||||||||   |||||||| ||||||||||| |||| |||||| ||||| ||||    ||||  |||    |||  T
       TTC AAG AAGCTGGGATGTGGGCCACTTTTT   GCCCACCC GAAGACGACGG GCAC AGAAAA AAATA AAAG    ATTT  GGG    TCC  
AAAAGTA   C   G                        ATA        C           G    G      A     A    ----    -T   AATT   AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520364

TTATGAAAAGATTTGTTCGACCCTACACCCGGTGAAAAACACCGGGTGGGTCTTCTGCTGCCACGTGTCTTTTCTTTGTATTTTATAATAGATTCCCCGCTAGGGTTTACCTTTAAGGGTTTTAGAAAAATAAAAAAAAGAGCACGGGGCAGCAGAAGCCCCACCCGATATTTTTCACCGGGTGTAGGGTCGAAGGAACCTTATGAAAA

Copy Cancel