Plant MITE

SE3520368

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6586
Mimulus guttatus
SE3520368
Mutator
M19
scaffold_10:10978022-10978654
TTTCTTTTT
AGGCTTAATTCCACTTTGCACTCTTGAAAT

Secondary structure and sequence

TSD TIR

5'

3'

 TTTCTTTTT                              ATACCA                   -C    CAAT                                T     G         --     CATG -   TTTAAAGCTAATAAAGGTAATTTAATATTTTTAGTGGTATTTAAAAATTATATTTTTTATCACAAAAAAATATTTTACGAAAAAAACTCTTCAGCTATTTCTTTATCAAGTTGTCTGAAAATCACATTTTCTTCCAAATATTTCTACCTAATATTTCCACCAATTACAATAAAAGATCTATCA
          AGGCTTAATTCCACTTTGCACTCTTGAAAT      TTTTGGCACTTTGCACCCT  GAGA    GTAATAGCACTTTGCACCCTCGAAACACAATA ATCAT CATAATGCA  CTCCA    A GTT                                                                                                                                                                                       
          ||||||||||||||||||||||||||||||      |||||||||||||||||||  ||||    |||||||||||||||||||||||||||||||| ||||| |||||||||  |||||    | |||                                                                                                                                                                                        
          TCCGAATTAGGGTGAAACGTGGGAACTTTA      AAAACCGTGAAACGTGGGA  TTCT    TATTATCGTGAAATGTGGGAGTTTTGTGTTAT TAGTA GTGTTGCGT  CCTAT    T AGT                                                                                                                                                                                       
ATTTTTTCTT                              CCTCAG                   AC    --AT                                T     A         TT     ---- A   AACAAATAACTAAAAATAAGGCCCCACTTTTTATTGTTTAATTTAACAATAAAAGAAGTTGGAGGTTGGATTAAAGCTCGAGTGTTTCACGTTTTTTTTTGTTAGTGTGGCCTATTAACTTTTTTATATATATAAAAGAATGTTTTATTTTAGTTTATTTGAAATTAATGATTTAATAAGTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520368

TTTCTTTTTAGGCTTAATTCCACTTTGCACTCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAGACAATGTAATAGCACTTTGCACCCTCGAAACACAATATATCATGCATAATGCACTCCACATGAGTTTTTAAAGCTAATAAAGGTAATTTAATATTTTTAGTGGTATTTAAAAATTATATTTTTTATCACAAAAAAATATTTTACGAAAAAAACTCTTCAGCTATTTCTTTATCAAGTTGTCTGAAAATCACATTTTCTTCCAAATATTTCTACCTAATATTTCCACCAATTACAATAAAAGATCTATCAATTGAATAATTTAGTAATTAAAGTTTATTTGATTTTATTTTGTAAGAAAATATATATATTTTTTCAATTATCCGGTGTGATTGTTTTTTTTTGCACTTTGTGAGCTCGAAATTAGGTTGGAGGTTGAAGAAAATAACAATTTAATTTGTTATTTTTCACCCCGGAATAAAAATCAATAAACAATGAATTATCCTTTGCGTTGTGAATGATTTATTGTGTTTTGAGGGTGTAAAGTGCTATTATTATCTTCAAGGGTGCAAAGTGCCAAAAGACTCCATTTCAAGGGTGCAAAGTGGGATTAAGCCTTTCTTTTTTA

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