Plant MITE

SE3540369

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6587
Mimulus guttatus
SE3540369
CACTA
Ca1
scaffold_10:16716587-16716880
AAA
CACTAGTAGAAAATTTGTTTTTTACTACGA

Secondary structure and sequence

TSD TIR

5'

3'

AAA             TTT              AATA     C      CAAAAGCCGTAACAAAAGGGACTTTTTACTACGGGATAATTTAGAAGTCGTAGTAAATATTAGGATTTACTGTAGCAAAAAAGTATTTGGTACGGCCATT
   CACTAGTAGAAAA   GTTTTTTACTACGA    TTTTG TACGGT                                                                                                    
   |||||||||||||   ||||||||||||||    ||||| ||||||                                                                                                     
   GTGATCATCTTTT   CAAAAAATGATGCT    GGTAA TGGCAT                                                                                                    
AAA             TAT              ----     T      AGTTTTACATAGTTTAAGCATCATTTTTCCGAAAACGATACGTAAACGATACTTAAACGGGCCATCATATATGCCCGCACTGTTTTTGAAACGATGCCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3540369

AAACACTAGTAGAAAATTTGTTTTTTACTACGAAATATTTTGCTACGGTCAAAAGCCGTAACAAAAGGGACTTTTTACTACGGGATAATTTAGAAGTCGTAGTAAATATTAGGATTTACTGTAGCAAAAAAGTATTTGGTACGGCCATTTACCGTAGCAAAGTTTTTGTCACGCCCGTATATACTACCGGGCAAATTCATAGCAAATGCATAGCAAAAGCCTTTTTACTACGAATTTGATACATTTTGATACGGTTAATGGTCGTAGTAAAAAACTATTTTTCTACTAGTGAAA

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