SE3520370

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6588
  • Mimulus guttatus
  • SE3520370
  • Mutator
  • M8
  • scaffold_9:754133-754596
  • TAAATATTT
  • AAATATTTGGATAAATTACAACCACCCCTGAGATATGGTCAAATTACGAAAAACCCCTCATGTTTGGATAATTACAGATACCTCCTCAACTATGAATTTTCTTACATCTCCACCCTTATGGTGTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
T        -  A             CC                           C   -TC      -  A         A    T                        C         A    G       CAACAT    A        T   C          T                  G ---AAAA     GTT CTGATGCACCACAATCTGATGTATACAAGCCAA
 AAATATTT GG TAAATTACAACCA  CCTGAGATATGGTCAAATTACGAAAAA CCC   ATGTTT GG TAATTACAG TACC CCTCAACTATGAATTTTCTTACAT TCCACCCTT TGGT TCAAATT      AATC TCTAGATT TGT GAATGTTCTC AGTTTGTACTCGTTTTGT C       ATACA   T                                 
 |||||||| || |||||||||||||  ||||||||||||||||||||||||||| |||   |||||| || ||||||||| |||| |||||||||||||||||||||||| ||||||||| |||| |||||||      |||| |||||||| ||| |||||||||| |||||||||||||||||| |       |||||   |                                 A
 TTTATAAA CC ATTTAATGTTGGT  GGACTCTATACCAGTTTAATGCTTTTT GGG   TACAAA CC ATTAATGTT GTGG GGAGTTGATATTTAGAAGAATGTG AGGTGGGAA GTCA AGTTTAA      TTAG AGATCTAA ATA CTTATAAGAG TTAAACATGGGCAAAATA G       CGAGG   T                                 
         T  C             -T                           T   TAT      A  -         G    -                        C         C    A       ATCACC    A        T   C          T                  G ATAAGCT     --- ATAAAACTTCGTTCTATTAGTATTCTACAGAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End