SE3530372

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6590
  • Mimulus guttatus
  • SE3530372
  • hAT
  • Hat7
  • scaffold_12:16968750-16969233
  • GATGCTCG
  • GATGCTCGTAGGGGTGTAAACGAGCCGAGCTCGC

Secondary structure and sequence

TSD    TIR
5'



3'
   T  -  G           -----        A      CTTA     T     C     --          -     -   A    GAGGAGCCTATAAGTTTTAGCTCGAGCTCGAGCTCTTTGTGTTTCTAAGGAGCTCGAACTCGCGCTCGAGCTCGTATACGAAACGAGCCCGAGCTCGAGCTCGGCACAACCAAAAATCCATCCATCAAATTTATTTTTTCAATTAAAAAAGTAATATTATT
 GA GC TC TAGGGGTGTAA     ACGAGCCG GCTCGC    TTTCG GAGCT GAGCT  CGAGCTCGGC AAGGC TTG GCTC                                                                                                                                                                 
 || || || |||||||||||     |||||||| ||||||    ||||| ||||| |||||  |||||||||| ||||| ||| ||||                                                                                                                                                                 C
 CT CG AG ATCCCCACATT     TGCTCGGC CGAGCG    AAAGC TTCGA ACGAG  TTTTTCGAGC TGAGC CGA GCTC                                                                                                                                                                 
G  -  T  -           TACTC        -      CTCG     -     -     CT          A     T   -    GAGCTCGAGTGCTCGGGCTCGAAAAGCTGCTCAGCTCGAGCTCGAAGTAAAGTCAACAAGCTGTCGAGCGCTCGTCCGAGCGCTCGAATTGGAAAAGAGATATAAAAATTTATGTATAACTATTATATATTATTATCTATAATAATTATTATTTATTTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End